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1

Mechanism of Voltage Gating in Potassium Channels

Jensen, M. O., Jogini, V., Borhani, D. W., Leffler, A. E., Dror, R. O., Shaw, D. E.

Journal:

Year:

2012

Language:

english

File:

PDF, 5.48 MB

english, 2012

2

Mechanism of NMDA receptor channel block by MK-801 and memantine

Song, Xianqiang, Jensen, Morten Ø., Jogini, Vishwanath, Stein, Richard A., Lee, Chia-Hsueh, Mchaourab, Hassane S., Shaw, David E., Gouaux, Eric

Journal:

Year:

2018

Language:

english

File:

PDF, 7.20 MB

english, 2018

3

Structural basis for the coupling between activation and inactivation gates in K+ channels

Cuello, Luis G., Jogini, Vishwanath, Cortes, D. Marien, Pan, Albert C., Gagnon, Dominique G., Dalmas, Olivier, Cordero-Morales, Julio F., Chakrapani, Sudha, Roux, Benoît, Perozo, Eduardo

Journal:

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

4

Structural mechanism of C-type inactivation in K+ channels

Cuello, Luis G., Jogini, Vishwanath, Cortes, D. Marien, Perozo, Eduardo

Journal:

Year:

2010

Language:

english

File:

PDF, 926 KB

english, 2010

5

On the structural basis of modal gating behavior in K+ channels

Chakrapani, Sudha, Cordero-Morales, Julio F, Jogini, Vishwanath, Pan, Albert C, Cortes, D Marien, Roux, Benoît, Perozo, Eduardo

Journal:

Nature Structural and Molecular Biology

Year:

2010

Language:

english

File:

PDF, 1.56 MB

english, 2010

6

Molecular determinants of gating at the potassium-channel selectivity filter

Cordero-Morales, Julio F, Cuello, Luis G, Zhao, Yanxiang, Jogini, Vishwanath, Cortes, D Marien, Roux, Benoît, Perozo, Eduardo

Journal:

Nature Structural and Molecular Biology

Year:

2006

Language:

english

File:

PDF, 561 KB

english, 2006

7

Molecular driving forces determining potassium channel slow inactivation

Cordero-Morales, Julio F, Jogini, Vishwanath, Lewis, Anthony, Vásquez, Valeria, Cortes, D Marien, Roux, Benoît, Perozo, Eduardo

Journal:

Nature Structural and Molecular Biology

Year:

2007

Language:

english

File:

PDF, 817 KB

english, 2007

8

A molecular mechanism for proton-dependent gating in KcsA

Luis G. Cuello, D. Marien Cortes, Vishwanath Jogini, Amornrat Sompornpisut, Eduardo Perozo

Journal:

Year:

2010

Language:

english

File:

PDF, 827 KB

english, 2010

9

Design and characterization of a constitutively open KcsA

Luis G. Cuello, Vishwanath Jogini, D. Marien Cortes, Amornrat Sompornpisut, Michael D. Purdy, Michael C. Wiener, Eduardo Perozo

Journal:

Year:

2010

Language:

english

File:

PDF, 608 KB

english, 2010

10

Structural Dynamics of the Magnesium-Bound Conformation of CorA in a Lipid Bilayer

Olivier Dalmas, Luis G. Cuello, Vishwanath Jogini, D. Marien Cortes, Benoit Roux, Eduardo Perozo

Journal:

Year:

2010

Language:

english

File:

PDF, 1.73 MB

english, 2010

11

Expression, Purification, and Reconstitution of the Voltage-Sensing Domain from Ci-VSP

Li, Qufei, Jogini, Vishwanath, Wanderling, Sherry, Cortes, D. Marien, Perozo, Eduardo

Journal:

Year:

2012

Language:

english

File:

PDF, 1.88 MB

english, 2012

12

Electrostatics of the Intracellular Vestibule of K+ Channels

Vishwanath Jogini, Benoît Roux

Journal:

Journal of Molecular Biology

Year:

2005

Language:

english

File:

PDF, 828 KB

english, 2005

13

Corrigendum to “Electrostatics of the Intracellular Vestibule of K+ Channels” [J. Mol. Biol. 354 (2006) 272–288]

Vishwanath Jogini, Benoît Roux

Journal:

Journal of Molecular Biology

Year:

2007

File:

PDF, 202 KB

2007

14

Mechanism of Intracellular Block of the KcsA K+ Channel by Tetrabutylammonium: Insights from X-ray Crystallography, Electrophysiology and Replica-exchange Molecular Dynamics Simulations

José D. Faraldo-Gómez, Esin Kutluay, Vishwanath Jogini, Yanxiang Zhao, Lise Heginbotham, Benoît Roux

Journal:

Journal of Molecular Biology

Year:

2007

Language:

english

File:

PDF, 1.69 MB

english, 2007

15

Mechanism of Cd2+ Coordination during Slow Inactivation in Potassium Channels

H. Raghuraman, Julio F. Cordero-Morales, Vishwanath Jogini, Albert C. Pan, Astrid Kollewe, Benoît Roux, Eduardo Perozo

Journal:

Year:

2012

Language:

english

File:

PDF, 1.21 MB

english, 2012

16

On the Nature of hERG Inactivation using KcsA, Shaker and Kv1.2 as Structural and Functional Models

Cordero-Morales, Julio F., Jogini, Vishwanath, Lewis, Anthony, Vasquez, Valeria, Tristani-Firouzi, Martin, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 147 KB

english, 2009

17

Molecular Dynamics Simulation of the Kv1.2 Potassium Channel

Khalili-Araghi, Fatemeh, Jogini, Vishwanath, Yarov-Yarovoy, Vladimir, Tajkhorshid, Emad, Roux, Benoit, Schulten, Klaus

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 48 KB

english, 2009

18

Calculation of the Gating Charge for the Kv1.2 Voltage-Activated Potassium Channel

Khalili-Araghi, Fatemeh, Jogini, Vishwanath, Yarov-Yarovoy, Vladimir, Tajkhorshid, Emad, Roux, Benoît, Schulten, Klaus

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 914 KB

english, 2010

19

Voltage Profile along the Permeation Pathway of an Open Channel

Contreras, Jorge E., Chen, Jin, Lau, Albert Y., Jogini, Vishwanath, Roux, Benoît, Holmgren, Miguel

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 568 KB

english, 2010

20

A Multipoint Hydrogen-Bond Network Underlying KcsA C-Type Inactivation

Cordero-Morales, Julio F., Jogini, Vishwanath, Chakrapani, Sudha, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 609 KB

english, 2011

21

Dynamics of the Kv1.2 Voltage-Gated K+ Channel in a Membrane Environment

Jogini, Vishwanath, Roux, Benoît

Journal:

Biophysical Journal

Year:

2007

Language:

english

File:

PDF, 1.21 MB

english, 2007

22

Effect of Altered Ion Occupancy on Permeation and Inactivation Gating in K+ Channel

Chakrapani, Sudha, Jogini, Vishwanath, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 37 KB

english, 2010

23

On the Structural Basis of Modal Gating Behavior in K+ Channels

Chakrapani, Sudha, Cordero-Morales, Julio F., Jogini, Vishwanath, Pan, Albert C., Cortes, D. Marien, Roux, Benoît, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

24

Refinement and Validation of Atomic Models of the Kv1.2 Potassium Channel Through Molecular Dynamics and Gating Charge Calculations

Khalili-Araghi, Fatemeh, Jogini, Vishwanath, Yarov-Yarovoy, Vladimir, Tajkhorshid, Emad, Roux, Benoit, Schulten, Klaus

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 50 KB

english, 2010

25

Engineering the hERG1 Selectivity Filter into the NaK Pore Domain

Cordero-Morales, Julio F., Jogini, Vishwanath, Vasquez, Valeria, Bourdeau, Raymond W., Yu, Haibo, Roux, Benoit, Tristani-Firouzi, Martin, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 39 KB

english, 2011

26

The Importance of Ion Binding for Potassium Channel Inactivation and Recovery

Pan, Albert C., Chakrapani, Sudha, Jogini, Vishwanath, Cuello, Luis G., Cortes, Doris M., Perozo, Eduardo, Roux, Benoit

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 39 KB

english, 2010

27

Editorial board

Pan, Albert C., Chakrapani, Sudha, Jogini, Vishwanath, Cuello, Luis G., Cortes, Doris M., Perozo, Eduardo, Roux, Benoit

Journal:

Journal of the American Society of Echocardiography

Year:

2007

Language:

english

File:

PDF, 66 KB

english, 2007

28

On the Structure-Function correlates of Ion Occupancy and modulation of C-type Inactivation

Chakrapani, Sudha, Jogini, Vishwanath, Cuello, Luis G., Cortes, Marien, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

29

Gating-related Structural Dynamics in the Outer Vestibule of KcsA: A Functional and Spectroscopic Analysis

Raghuraman, H., Cordero-Morales, Julio F., Jogini, Vishwanath, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 21 KB

english, 2009

30

Voltage Profile along the Permeation Pathway of an Open Channel

Chen, Jin, Contreras, Jorge E., Lau, Albert Y., Jogini, Vishwanath, Roux, Benoît, Holmgren, Miguel

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 35 KB

english, 2010

31

Crystal Structure Of Full-length Kcsa Trapped In Open Conformation Reveals That C-terminal Domain Fine Tunes Activation And Coupled Inactivation

Uysal, Serdar, Cuello, Luis G., Jogini, Vishwanath, Cortes, D. Marien, Koide, Shohei, Perozo, Eduardo, Kossiakoff, Anthony

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 38 KB

english, 2009

32

Structural Basis of an Inherited hERG1 Long QT Mutant

Cordero-Morales, Julio F., Jogini, Vishwanath, Lewis, Anthony, Vasquez, Valeria, Medovoy, David, Tristani-Firouzi, Martin, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 40 KB

english, 2011

33

Free Energy Landscape for the Inactivation of the KcsA Potassium Channel

Pan, Albert C., Jogini, Vishwanath, Cuello, Luis G., Cortes, D.M., Perozo, Eduardo, Roux, Benoit

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

34

Structural Basis For The Coupling Between Activation And Inactivation Gating In Potassium Channels

Cuello, Luis G., Jogini, Vishwanath, Cortes, D. Marien, Pan, Albert C., Gagnon, Dominique G., Cordero-Morales, Julio F., Chakrapani, Sudha, Roux, Benoit, Perozo, Eduardo

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 41 KB

english, 2009

35

Principles of conduction and hydrophobic gating in K+ channels

Jensen, M. O., Borhani, D. W., Lindorff-Larsen, K., Maragakis, P., Jogini, V., Eastwood, M. P., Dror, R. O., Shaw, D. E.

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 2.51 MB

english, 2010

36

Atomic-level simulation of current-voltage relationships in single-file ion channels

Jensen, M. O., Jogini, V., Eastwood, M. P., Shaw, D. E.

Journal:

The Journal of General Physiology

Year:

2013

Language:

english

File:

PDF, 2.01 MB

english, 2013

37

Atomic Constraints between the Voltage Sensor and the Pore Domain in a Voltage-gated K+ Channel of Known Structure

Lewis, A., Jogini, V., Blachowicz, L., Laine, M., Roux, B.

Journal:

The Journal of General Physiology

Year:

2008

Language:

english

File:

PDF, 3.08 MB

english, 2008

38

Principles of conduction and hydrophobic gating in K⁺ channels

Morten Ø. Jensen, David W. Borhani, Kresten Lindorff-Larsen, Paul Maragakis, Vishwanath Jogini, Michael P. Eastwood, Ron O. Dror, David E. Shaw and Francisco Bezanilla

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 1.75 MB

english, 2010

39

Transglutaminase 5 is regulated by guanine–adenine nucleotides 1

CANDI, Eleonora, PARADISI, Andrea, TERRINONI, Alessandro, PIETRONI, Valentina, ODDI, Sergio, CADOT, Bruno, JOGINI, Vishwanath, MEIYAPPAN, Muthuraman, CLARDY, Jon, FINAZZI-AGRO, Alessandro, MELINO, Ger

Journal:

Biochemical Journal

Year:

2004

Language:

english

File:

PDF, 819 KB

english, 2004

40

Permeation, Gating, and Modulation of the TRPA1 Channel in Long-Timescale Molecular Dynamics Simulations

Koldsø, Heidi, Jensen, Morten Ø., Jogini, Vishwanath, Shaw, David E.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 48 KB

english, 2017

41

Mechanism of NMDA Receptor Channel Block by MK-801 and Memantine

Song, Xianqiang, Jensen, Morten Ø., Jogini, Vishwanath, Stein, Richard A., Lee, Chia-Hsueh, Mchaourab, Hassane S., Shaw, David E., Gouaux, Eric

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 58 KB

english, 2018

42

S3h1-1 Molecular Determinants of Gating at the K^+ Channel Selectivity Filter, Probed by Protein Crystallography and Molecular Dynamics Simulations(S3-h1: "Structural Aspects of Channel and Transporter Proteins",Symposia,Abstract,Meeting Program of EABS & BSJ 2006)

Zhao, Yanxiang, Jogini, Vish, Perozo, Eduardo, Roux, Benoit

Journal:

Seibutsu Butsuri

Year:

2006

Language:

english

File:

PDF, 158 KB

english, 2006